Results for "Data Structure"
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...ent all the information in raw reads.Fermi follows the overlap-layout-consensus paradigm and uses the FM-DNA-index (FMD-index) as the key data structure. It is inspired by the string...2847 days ago
- These tutorials are written for hundreds of bioinformaticians trying to cope with large volume of next-generation sequencing (NGS) data. NGS...
2851 days ago
- VALET is a pipeline for performing de novo validation of metagenomic assemblies. VALET checks a num...quality of different assemblies. For comparing multiple assemblies of the same data-sets...
2834 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular...f genomes, with a focus on handling genome assembly data. The application is available...es, draft genomes or even raw, unassembled sequence data. BR...2826 days ago
- DECIPHER is a software toolset that can be used to maintain, analyze, and decipher large amounts of DNA sequence data. To...
2826 days ago
- Strudel is our graphical tool for visualizing genetic and physical maps of genomes for comparative purposes. The application aims to let the user examine their data at a...
2826 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
A recombination map has been added for all multi-locus traits. The map positions (chromosomal) for...adjustments have been made for refined control of the input of parameters and data outp...2824 days ago
- The accurate description and annotation of structural variants can be complex. This is due to the different...tered from the reference sequence. Minimum interpretation is made of this data. One...
2824 days ago
- Development of cancer is driven by somatic alterations, including numerical and structural chromosomal aberration...ated breaks by a genome-wide approach, which can be applied to DNA copy number data obta...
2206 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for the analysis of miRNA (or more generall short RNA) expression using short-read deep sequencing data. In...
2821 days ago
