Results for "Paired end sequencing"
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This website and accompaning documents are intended as a tool to help researchers dealing wi...and process transcriptomic high-throughput sequencing data without having to learn...d.edu/denovo.html http://sfg.stanford.edu/sequencing.html http://sfg.stanford.edu...2618 days ago
- High throughput sequencing (HTS) technologies are being applied to a wide range of important topics in biology. However, the analyses of non-model organisms, for which little pre...
2615 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for PacBio reads. It uses a hybrid strategy, meaning that it uses two sets of reads: the refere...2610 days ago
- DBG2OLC:Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies Our work is pub...Using Long Erroneous Reads of the Third Generation Sequencing Technologies. Sci. Rep. 6, 31...
2601 days ago
- FASTQ format is a text-based format for storing both a biological s...come the de facto standard for storing the output of high-throughput sequencing instruments such as the ...
2587 days ago
- SSPACE standard is a stand-alone program for scaffolding pre-assembled contigs using NGS paired-read data. It is unique in offering the...s. By using the distance information of paired-end and/or matepair data, SSPACE...embled contig sequences (FASTA) and NGS paired-rea...
2585 days ago
CLA: Contig-Layout-Authenticator
...construction of draft genomes with Illumina paired-end sequencing, we developed Contig-L...n scaffold reference-sorted contigs based on paired reads, resulting in better...and real sequence datasets. CLA is a user friendly tool that requires a single comman...2585 days ago
- This tutorial will serve as an example of how to use free and open-source genome assembly and secondary scaffold...mply as “Species” since it is live data. This data is paired-end data,...
2585 days ago
CABOG: Celera Assembler with Best Overlap Graph
...ritical component of many genome sequencing projects. CABOG operates...he fundamental limitation of all sequencing machines, namely, that...ads from first-generation Sanger sequencing machines and second-generatio...grams for data sets that include paired end data from the Roche 454 line of sequ...2575 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS is a tool able to merge two or more assemblies in order to improve contiguity and correctness. It can be used on all NGS-based assembly projects and it shows its...2571 days ago
