DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchainer accepts a list of gene pairs with sequence homology...2676 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
ConPADE (Contig Ploidy and Allele Dosage Estimation), a probabilistic m...s. In the process, they report findings regarding errors in sequencing. The method can be used for whole genome shotgun (WGS) sequencing data. They also show applicab...2670 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
...emes in Strand NGS v3.1 address recent challenges in next generation sequencing (NGS). The first theme is lar...ncentrations. In RNA-Seq, large-scale and UMI support can be used in single-cell-based studies that reveal tu...2429 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery t...Fjournal.pone.0047768PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS read...2667 days ago
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2660 days ago
SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line...2659 days ago
2651 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visualize metagenomic assemblies by plotting coverage (sequencing depth) and GC values of conti...2639 days ago
2635 days ago