Results for "1"
Bookmarks
HGA tool version 1.0 This tool helps to apply the Hierarchical Genome Assembly (HGA) method. The tool will apply: 1. Partitioning a given reads d...of the partition (using velvet with kmer value of 31). 5. Finaly, re-assembling th...2754 days ago
- ...es reconstruction and pairs merging. After that biodiversity is searching. There are two types of searching depending on the amplicons types (ITS or 16S). If WGS are chosen, then b...
2752 days ago
- ...ts binaries (Source code) (Legacy codebase) For the impatient A typical Minia command line looks like: ./minia -in reads.fa -kmer-size 31 -abundance-min 3 -out output_...
2745 days ago
- ...sga SGA dependencies: -google sparse hash library (http://code.google.com/p/google-sparsehash/) -the bamtools library (https://github.com/pezmaster31/bamtools) -zlib (http://www.z...
2745 days ago
- PRISM is a software for split read (reads which span across a structrual variant -- SV ) mapping and SV calling from the mapping result. PRISM is able to detect smal...
2742 days ago
- ...tailored for ancient DNA data within a single integrated solution in an easily accessible format. https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0918-z
2742 days ago
- ...pt comes with an extensive suite of automated tests and is available under the terms of the MIT license. If you use cutadapt, please cite DOI:10.14806/ej.17.1.200 . More...
2739 days ago
Understanding Greedy Algorithms
...on/ps/conference/super_biokdd.pdf https://ocw.mit.edu/courses/biology/7-91j-foundations-of-computational-and-systems-biology-spring-2014/lecture-slides/MIT7_91JS14_L...2741 days ago
- ...ment with no options. It is used when .sam files are used instead of reads .fastq files. Do not use this option if you provide reads files; -1) (Comma separated list of) ei...
2740 days ago
E-MEM: Efficient computation of Maximal Exact Matches
...MEM, please cite: N. Khiste, L. Ilie, E-MEM: Efficient computation of Maximal Exact Matches for very large genomes, Bioinformatics 31(4) (2015) 509 -- 514. For any ques...2738 days ago
