Results for "New Genome"
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The eFORGE tool provides a method to view the tissue specific regulatory component...set of EWAS DMPs. eFORGE analysis takes a set of DMPs, such as those hits above genome-wide significance threshold i...2797 days ago
- ART is a set of simulation tools to generate synthetic...a primary tool for the simulation study of the 1000 Genomes Project . ART is implemented...UCSC BED file format. ART can be used together with genome variants simulators (e.g. Var...
2791 days ago
- LINKS is a genomics application for scaffolding genome assemblies with long reads, such as those p...can be used to scaffold high-quality draft genome assemblies with any long sequ...(eg. ONT reads, PacBio reads, another draft genomes, etc) Paper at https:/...
2791 days ago
Maq: Mapping and Assembly with Quality
Maq stands for Mapping and Assembly with Quality It builds assembly...e FASTA format. Prepare a reference sequence (ref.fasta). Better a bacterial genome. Download maq, maq-data and...2773 days ago
- ...producing multiple times the genome size in total reads from a...disregarded and the reference genome is used. Results. We provide a new approach that allows researchers...nal sequencing cost, generate new, modified reference sequence tha...loser to the actual sequenced genome and has a full coverage. In t...
2769 days ago
- Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad In...a highly parallelized program for high-sensitivity, genome-wide synteny; Papaya,&nb...
2767 days ago
- HGA tool version 1.0 This tool helps to apply the Hierarchical Genome Assembly (HGA) method. The to...er size. https://github.com/aalokaily/Hierarchical-Genome-Assembly-HGA
2765 days ago
- EXCAVATOR2 is a collection of bash, R and Fortran scripts and codes that analyses W...eficial effect to identify novelCNVs in extra-exonic regions by having the full-genome CN profile.
2765 days ago
- SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at https://github.com/atifrahman/SWALO.
2765 days ago
- Bipype is a very useful program, which prepare a lot of types of bioinformatics analyses. There are three input options: amplicons, WGS (whole genome sequences) and metatranscript...
2763 days ago
