Results for "Whole genome"
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The eFORGE tool provides a method to view the tissue specific regulatory component o...et of EWAS DMPs. eFORGE analysis takes a set of DMPs, such as those hits above genome-wide significance threshold i...2790 days ago
- ART is a set of simulation tools to generate synthetic ne...a primary tool for the simulation study of the 1000 Genomes Project . ART is implemented...UCSC BED file format. ART can be used together with genome variants simulators (e.g. Var...
2784 days ago
- LINKS is a genomics application for scaffolding genome assemblies with long reads, such as those p...can be used to scaffold high-quality draft genome assemblies with any long sequ...(eg. ONT reads, PacBio reads, another draft genomes, etc) Paper at https:/...
2783 days ago
Maq: Mapping and Assembly with Quality
Maq stands for Mapping and Assembly with Quality It builds assembly b...FASTA format. Prepare a reference sequence (ref.fasta). Better a bacterial genome. Download maq, maq-data and...2765 days ago
- Background. Next-generation sequenc...producing multiple times the genome size in total reads from a si...rences between the individual genome studied in the experiment and...disregarded and the reference genome is used. Results. We provide...loser to the actual sequenced genome and has a full coverage. In t...
2762 days ago
- Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad In...a highly parallelized program for high-sensitivity, genome-wide synteny; Papaya,&nb...
2759 days ago
- ...1.0 This tool helps to apply the Hierarchical Genome Assembly (HGA) method. The t...mer value of 31). 5. Finaly, re-assembling the whole dataset with the merged contig...ze. https://github.com/aalokaily/Hierarchical-Genome-Assembly-HGA
2758 days ago
- ...is a collection of bash, R and Fortran scripts and codes that analyses Whole Exome Sequencing (WES) data t...effect to identify novelCNVs in extra-exonic regions by having the full-genome CN profile.
2757 days ago
- SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at https://github.com/atifrahman/SWALO.
2757 days ago
- Bipype is a very useful program, which prepare a lot of types of bioinformatics analyses. There are three input options: amplicons, WGS (whole genome sequences) and metatranscriptomic da...
2756 days ago
