Results for "genome announcements"
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The eFORGE tool provides a method to view the tissue specific regulatory component of a set of EWAS DMPs. eFORGE analysis takes a set of DMPs, such as those hits above genome-wide s...2774 days ago
- ART is a set of simulation tools to generate synthetic next-generation sequencing read...primary tool for the simulation study of the 1000 Genomes Project . ART is implemented...SC BED file format. ART can be used together with genome varian...
2768 days ago
- LINKS is a genomics application for scaffolding genome assemblies with long reads, such as those prod...It can be used to scaffold high-quality draft genome assemblies with any long sequ...es (eg. ONT reads, PacBio reads, another draft genomes, etc)...
2767 days ago
Maq: Mapping and Assembly with Quality
Maq stands for Mapping and Assembly with Quality It builds assembly by mapping short reads to refe...ASTA format. Prepare a reference sequence (ref.fasta). Better a bacterial genome. Down...2749 days ago
- Background. Next-generation sequencing technologies are now producing multiple times the genome size in total reads from a si...rences between the individual genome studied in the experiment and...disregarded and the reference genome is used. Results. We provide...loser to the actual sequenced genome and ha...
2746 days ago
- Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad Institute. It provides basic data st...tsuma, a highly parallelized program for high-sensitivity, genome-wide s...
2743 days ago
- HGA tool version 1.0 This tool helps to apply the Hierarchical Genome Assembly (HGA) method. The tool will apply: 1. Partitioning a given...using a given kmer size. https://github.com/aalokaily/Hierarchical-Genome-Assemb...
2742 days ago
- EXCAVATOR2 is a collection of bash, R and Fortran scripts and codes that analyses Whole Exome Sequencing (WES) da...cial effect to identify novelCNVs in extra-exonic regions by having the full-genome CN pro...
2741 days ago
- SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at https://github.com/atifrahman/SWALO.
2741 days ago
- Bipype is a very useful program, which prepare a lot of types of bioinformatics analyses. There are three input options: amplicons, WGS (whole genome sequen...
2740 days ago
