2592 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies capa...problem. We compared GRASS with existing HTS scaffolders using Illumina paired reads o...2591 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or prote...sequence-based project, e.g. should the library be paired-end or not, how many reads s...2590 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and a... Meaningful mapping quality. ...p; Overlapping of reads for de novo assembly. Transcriptome mapping through internal construction...from raw nanopore and PacBio reads without requiring error correct...2576 days ago
Omega2: metagenome assembly pipeline
Omega found overlaps between reads using a prefix/suffix hash table. The overlap graph of reads was simplified by removing transitive edges and trimming short branches. Unitigs were generated based on minim...a can more efficiently assemble longer Illumina reads,...2543 days ago
2558 days ago
2543 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
We describe a new algorithm, meraculous, for whole genome assembly of deep paired-end short reads, and apply it to the assembly...aset of paired 75-bp Illumina reads derived from the 15.4 megabas...rection step as used in other short-read assemblers. A novel memo...red and oriented using paired reads s...2423 days ago
QuorUM: An Error Corrector for Illumina Reads
...age of a genome by relatively short (most often 100 bp to 150 bp) reads at a low cost. Even with low...erroneous k-mers in the reads. However, there is enough inf...ent use of the data (e.g. for mapping or assembly) easier. Here w...at error correcting Illumina reads for subsequent assembly. It is...2422 days ago
Unicycler: Hybrid assembly pipeline for bacterial genomes
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where...n pipeline. For the best possible assemblies, give it both Illumina reads and long reads,...2420 days ago