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Understanding Greedy Algorithms
Learning greedy algo for biologist. https://www.topcoder.com/community/data-science/data-science-tutorials/greedy-is-good/ This webpage is also useful for the same: http://learnin...2731 days ago
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e-RGA: enhanced Reference Guided Assembly of Complex Genomes
Next Generation Sequencing has totally changed genomics: we are able to produce huge amounts of data at an incredibly low cost compared to Sanger sequencing. Despite this, some old p...2724 days ago
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Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...locates the 3' end of every gene in the experimentally verified Ecogene data set (except those containing...n initiation site with great accuracy (96% of the 5' ends in the Ecogene data set are located correctly)....2714 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
...matrix Perform RNA velocity and single-nuclei RNA-seq analsis Quantify data from numerous technologies su...workflows for new technologies and protocols. Process feature barcoding data such as CITE-seq, REAP-seq, M...1156 days ago