Results for "Genome Biology"
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Visualization has played an extremely important role in the current genom...information in read-to-reference or genome-genome alignments is lost for struct...sed this problem by creating Ribbon (genomeribbon.com) an interactive onl...lso load coordinate files from whole genome...2809 days ago
- Background: Transcriptomics, metabolomics, metagenomics, and other various next-gener...of large datasets. Visualizing such big data has posed technical challenges in biology, both in terms of available c...
2809 days ago
- Summary: GenomeScope is an open-source web tool to rapidly est...mate the overall characteristics of a genome, including genome size, heter...e features are essential for studying genome evolution, and help to choose...16 real datasets with a wide range in genome...
2402 days ago
- Beagle is a software package that performs genotype calling, genotype phasing, imputation of ungenotyped markers, a...007) Rapid and accurate haplotype phasing and missing data inference for whole genome...
2803 days ago
- Seven Bridges is the biomedical data analysis company accelerating breakthroughs in genomics research for...sion medicine. We build self-improving systems to analyze millions of genomes, including the Graph Genome...
2802 days ago
- The eFORGE tool provides a method to view the tissue specific regulatory component of a set of EWAS DMPs. eFORGE analysis takes a set of DMPs, such as those hits above genome-...
2802 days ago
- ART is a set of simulation tools to generate synthetic next-generation sequencing reads...primary tool for the simulation study of the 1000 Genomes Project . ART is implemented...CSC BED file format. ART can be used together with genome...
2796 days ago
- LINKS is a genomics application for scaffolding genome assemblies with long reads, such as those produ.... It can be used to scaffold high-quality draft genome assemblies with any long sequ...ces (eg. ONT reads, PacBio reads, another draft genomes...
2795 days ago
Maq: Mapping and Assembly with Quality
Maq stands for Mapping and Assembly with Quality It builds assembly by mapping short reads to refere...FASTA format. Prepare a reference sequence (ref.fasta). Better a bacterial genome....2777 days ago
- Background. Next-generation sequencing technologies are now producing multiple times the genome size in total reads from a si...rences between the individual genome studied in the experiment and...disregarded and the reference genome is used. Results. We provide...loser to the actual sequenced genome...
2774 days ago
