Tags: Bioinformatics, Analysis, Assembly, Genome, SGA, NGS
2732 days ago
Tags: Bioinformatics, Analysis, NGS, fqtools, FASTQ
2731 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
Next Generation Sequencing has totally changed genomics: we are able to produce huge amounts of data at an incredibly low cost compared to Sanger sequencing. Despite this, some old problems have become even more difficult, de novo assembly being on top of this list. Despite efforts to design tool...Tags: Bioinformatics, Analysis, NGS, e-RGA, Genome, Assemble
2721 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, Velvet, NGS, Tutorial
2731 days ago
Tags: Bioinformatics, Comparative genomics, Genomics, Structure Variation, SV, NGS
2729 days ago
Tags: Bioinformatics, Ancient, EAGER, Genome, DNA, Sequence, NGS
2729 days ago
Tags: Bioinformatics, Analysis, Assembly, NGS, Cutadapt
2725 days ago
Understanding Greedy Algorithms
Learning greedy algo for biologist. https://www.topcoder.com/community/data-science/data-science-tutorials/greedy-is-good/ This webpage is also useful for the same: http://learninglover.com/examples.php?id=59 http://www.cs.rpi.edu/~magdon/ps/conference/super_biokdd.pdf https://ocw.mit....Tags: Bioinformatics, Assembly, Greedy, Genome, NGS
2728 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, NGS, ScaffMatch, Scaffoldings
2726 days ago
BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and economical method for detecting genomic structural variants and chromosomal abnormalities. Unfortunately, the mapping and alignment of mate pair read pairs to a reference genome is a challenging and time consuming process for most NGS alig...Tags: Bioinformatics, Analysis, Genome, Mapping, NGS, BIMA, Reads
2725 days ago