Results for "Genome Biology"
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...a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad Institute...bsp;Satsuma, a highly parallelized program for high-sensitivity, genome-wide synteny; Papaya,&nbs...2773 days ago
- HGA tool version 1.0 This tool helps to apply the Hierarchical Genome Assembly (HGA) method. The tool will apply: 1. Partitioning a given re...s, using a given kmer size. https://github.com/aalokaily/Hierarchical-Genome-...
2772 days ago
- EXCAVATOR2 is a collection of bash, R and Fortran scripts and codes that analyses Whole Exome Sequencing (WES) data...ficial effect to identify novelCNVs in extra-exonic regions by having the full-genome...
2771 days ago
- SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at https://github.com/atifrahman/SWALO.
2771 days ago
- Bipype is a very useful program, which prepare a lot of types of bioinformatics analyses. There are three input options: amplicons, WGS (whole genome...
2770 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of...e the best k-mer size, minimum abundance of correct k-mers, and genome...
2763 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed r...
2763 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) pdflatex (usually part of TeTeX)...Perl Optional: BLAT or BLAST (to generate alignments against a reference genome)...2762 days ago
- The automated reconstruction of genome sequences in ancient genome analysis is a multifaceted process. EAGER encompasses both...e integrated solution in an easily accessible format. https://genomebiology.biomedcentral.com/articles/10...
2761 days ago
Understanding Greedy Algorithms
Learning greedy algo for biologist. https://www.topcoder.com/com...gdon/ps/conference/super_biokdd.pdf https://ocw.mit.edu/courses/biology/7-91j-foundations-of-computational-and-systems-biology-spring-2014/lecture-slides/MI...2759 days ago
