Results for "B"
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RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fr...nome information and paired-end reads. http://www.ncbi.nlm.nih.gov/pubmed/23307812...3012 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
PEAR is an ultrafast, memory-efficient and highl...zed and can run with as low as just a few kilobytes of memory. PEAR evaluates all possible paired-end read overlaps an...tes on a standard desktop computer. More at http://www.exelixis-lab.org...3012 days ago
QUAST: quality assessment tool for genome assemblies
QUAST evaluates genome assemblies. For metagenomes, please see MetaQUAST project.It can works both with and without a given reference genome.The tool accepts multiple assemblies, thus is suitable for comparison. More at&nb...3011 days ago
REAPR: a universal tool for genome assembly evaluation
...luates the accuracy of a genome assembly using mapped paired end rea...erence genome for comparison. It can be used in any stage of an asse...lds and flag other errors in an assembly for manual inspection. It r...and paired reads mapped to the assembly in a BAM file. Mapping info...3011 days ago
- SCALCE (/skeɪlz/, a.k.a. boosting Sequence Compression Algorithms using Locally ConsistentEncoding) is a to...is designed specifically for the Illumina-generated FASTQ files, but supports any valid FASTQ wi...
3003 days ago
- Understanding Following table and graphs Duplication level kmer profile per base GC content per base N content per base quality per base sequence content per sequenc...ntent per sequence quality sequence length distribution More at http://www.bi...
3003 days ago
Trimmomatic: A flexible read trimming tool for Illumina NGS data
...GWINDOW:4:15 MINLEN:36 This will perform the following: Remove adapters (ILLUMINACLIP:TruSeq3-PE.fa:2:30:10) Remove leading low quality or N bases (below quality 3) (LEADING:3) R...3003 days ago
- ...t caller and DISCOVAR de novo a new genome assembler, both designed for state-of-the-...HiSeq 2500 — and from a single PCR-free library. These data enable a leve...CF. DISCOVAR de novo can generate de novo assemblies for both large and small...
3000 days ago
- SPAdes – St. Petersburg genome assembler – is intended for both standard isolates and single-cell MDA bacteria assemblies. T...version 3.7.1 was released under GPLv2 on March 8, 2016 and can be downloaded from http://bioin...
2999 days ago
- First step: Install & load “VennDiagram” package. # install.packages('VennDiagram') library(VennDiagram) Second step: Load data Add filepath if “catdoge.csv” is not in working-directory. d <- read.csv("catdoge.csv")
2992 days ago
