Results for "Genome Sequence"
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...disregarded and the reference genome is used. Results. We provide...generate a modified reference sequence. In this way, it can very q...erate new, modified reference sequence that is closer to the actual sequenced genome and has a full coverage. In thi...2772 days ago
- ...manipulation (mostly genomic sequences, alignments, variation etc...lyses. It also features three sequence alignment packages: Sats...program for high-sensitivity, genome-wide synteny; Papaya, ...ve local aligner for diverged sequences with large gaps. Access&nbs...
2769 days ago
- HGA tool version 1.0 This tool helps to apply the Hierarchical Genome Assembly (HGA) method. The tool will apply: 1. Partitioning a given r..., using a given kmer size. https://github.com/aalokaily/Hierarchical-Genome-A...
2768 days ago
- EXCAVATOR2 is a collection of bash, R and Fortran scripts and codes that analyses Whole Exome Sequencing (WES) data...ficial effect to identify novelCNVs in extra-exonic regions by having the full-genome C...
2767 days ago
- SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at https://github.com/atifrahman/SWALO.
2767 days ago
- ...atics analyses. There are three input options: amplicons, WGS (whole genome sequences) and metatranscriptomic data...in the SAM format given single-end reads, aligns reads to reference sequence(s). All of these analyses wil...
2766 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of...e the best k-mer size, minimum abundance of correct k-mers, and genome s...
2759 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is...efficient, which is achieved by using a compressed representation of DNA sequence reads. More at https://gith...
2759 days ago
- Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequenci...s by finding the adapter or primer sequences in an error-tolerant way. It...put data, without removing adapter sequences at all. Cutadapt comes with...
2753 days ago
Standardized velvet assembly report
...nal: BLAT or BLAST (to generate alignments against a reference genome). If using BLAT, add faToTwoB...r, cvCut, expCov, and other flags To Run: perl fastaAllSize mysequences.fa > mysequences.stat or gunzip -c mysequence...2758 days ago
