Results for "PE"
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_A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will take you through the steps necessary for running _A5-...2870 days ago
- ...;not a program for aligning sequences to reference genome. We do not recommend using CrossMap to convert genome coordinates between species....
2852 days ago
- ...nd generation Bambus scaffolder available as an open source package. While most other scaffolders are closely tied to a specific assembly program, Bambus...s able to accept contig linking data other than specified by mate-pairs. Such sou...
2872 days ago
- ...acilitate the analysis of the results. The choice of the post-treatment depends on the availability of a reference genome/transcriptome and on the need to perform a differential analysis,...
2872 days ago
- VALET is a pipeline for performing de novo validation of metagenomic assemblies. VALET checks a number of properties that should hold true fo...
2835 days ago
- ...maps. The input text file has to be in GenBank flat file format, whereas the output format can be chosen among several formats. The application is especially optimized and adapted f...
2872 days ago
- RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo repeat finding programs ( RECON and RepeatScout ) which employ complem...relationships from sequence data. RepeatModeler assists in automatin...
2870 days ago
- We advise to run first the TEdenovo pipeline but it is not compulsory. We suppose you begin by running the TEannot pipeline on the example provided in the directory "db/" rather than directly on your own genomic sequences. Thus, from now on, the project name is "DmelChr4".
2870 days ago
- Most variant calling pipelines result in files containing large quantities of variant information. The variant call format (vcf) is an increasingly popular format for...
2869 days ago
- Faster, more accurate algorithms function prediction "GeneMANIA (Multiple Association Network Integration Algorithm)" have however been developed in recent years and are publicly available on the web, indicating the future direction of function prediction.
2866 days ago
