Results for "Whole genome re-sequencing"
Bookmarks
Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad Institute. It provides basic data st...tsuma, a highly parallelized program for high-sensitivity, genome-wide s...2771 days ago
- HGA tool version 1.0 This tool helps to apply the Hierarchical Genome Assembly (HGA) method. The tool will apply:...r value of 31). 5. Finaly, re-assembling the whole dataset with the merged contig.... https://github.com/aalokaily/Hierarchical-Genome-Assemb...
2770 days ago
- ...R and Fortran scripts and codes that analyses Whole Exome Sequencing (WES) data t...ation of CNVs in small as well as large-scale re-sequencing population and cancer...Vs in extra-exonic regions by having the full-genome CN profile.
2769 days ago
- SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at https://github.com/atifrahman/SWALO.
2769 days ago
- Bipype is a very useful program, which prepare a lot of types of bioinformatics analyses. There are three input options: amplicons, WGS (whole genome sequen...
2768 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set...the best k-mer size, minimum abundance of correct k-mers, and genome size e...
2761 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed repr...
2761 days ago
- Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads. Cutadapt helps with t...
2755 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) pdflatex (usually part of TeTe...rl Optional: BLAT or BLAST (to generate alignments against a reference genome). If u...2760 days ago
- The automated reconstruction of genome sequences in ancient genome analysis is a multifaceted process. EAGER encompasses both state-of-...a single integrated solution in an easily accessible format. https://genomebiology...
2759 days ago
