GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al.,...2721 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs,...produce an improved contig set based on OLC based assembly. All overlap parameters (Mini...to $binpath in the tool: Newbler (specifically runAssembly)Minimus2 (part of AMOS, also...2721 days ago
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Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a mi...ery vanilla C). It can analyze an entire microbial genome in 30 seconds or less. Accur...ndifferent: Prodigal performs well even in high GC genomes,...2711 days ago
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