Results for "AP"
Bookmarks
SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation...2765 days ago
- PRISM is a software for split read (reads which span across a structrual variant -- SV ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abitrary size d...
2763 days ago
- Cutadapt finds and removes adapter sequences, primers, poly-A tails and...high-throughput sequencing reads. Cutadapt helps with these trimming tasks by finding the adapter or primer sequences in an...lex your input data, without removing adapter sequences at all. Cutadap...
2759 days ago
- ...is written in Python 2.7. It also includes a bash script wrapper that calls aligner in case one needs to first map reads to contigs (instead of...atch files are stored. These are .sam files produced after mapping reads to contigs and the...
2760 days ago
BIMA V3: an aligner customized for mate pair library sequencing
...ic structural variants and chromosomal abnormalities. Unfortunately, the mapping and alignment of mate pai...), and presence of structural variant breakpoints within reads increases mapping and alignment complexity....2759 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
...n tools able to assemble, de novo, an organism sequenced with short reads, the results are still far from those achievable with long reads. In this paper, we propose a novel method...2754 days ago
GARM:Genome Assembly, Reconciliation and Merging
...cess of finding probable compressions or extensions (CE) problems in the assemblies can be per-formed; contigs are joined back into scaffolds after gap recalculation2754 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
...) are identified through reads' alignments and stored in a weightedgraph. The merging phase is carried out with the help of this weighted graph that allows an optimal&...2754 days ago
- ...d read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory. PEAR evaluates all possible paired-end read overlaps and without requiring the ta...
2754 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
...om metagenomic sequencing runs) Description MeGAMerge is a perl based wrapper/tool that can accept any n...t to produce an improved contig set based on OLC based assembly. All overlap parameters (Minimum Overlap L...2754 days ago
