Results for "pyrosequencing data"
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SNPGenie is a Perl script for estimating evolutionary parameters, mainly from pooled next-generation sequencing (NGS) single-nucleotide polymorphism (SNP) variant data. SNP reports (acceptable in a...2644 days ago
- This website and accompaning documents are intended as a tool to...process transcriptomic high-throughput sequencing data without having to learn exten...biological questions with gene expression and SNP data. http://sfg.stanford.edu/den...
2641 days ago
- JSON (JavaScript Object Notation) is a lightweight data-interchange format. It is easy for humans...thers. These properties make JSON an ideal data-interchange language. JSON i...list, or sequence. These are universal data structures. Virtually all mod...
2640 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencin...etc. Why is LoRDEC different? It is efficient and can process large read data sets, included from eukaryoti...2634 days ago
- UpSetR generates static UpSet plots. The UpSet technique vis...enables the effective representation of associated data, such as the number of elemen...ubset or element attributes. To begin, input your data using one of the three input...
2630 days ago
Metagenomics assembly workshop !!
Welcome to the one-day metagenomics assembly workshop. This tutorial will guide you th...rough the typical steps of metagenome assembly and binning. The Tutorial Data Set FastQC Quality Control...2626 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromati...tes. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modificati...ents for large-scale functional and annotation datasets ChromHMM facilitates the...2625 days ago
- NGS data are just a bunch of sequences, you have no idea which region in...ce sequence is called mapping. The most used mappers of DNA-seq data are BWA and Bowtie for DNA-Seq data and Tophat, STAR&nb...
2612 days ago
- FASTQ format is a text-based format for storing both a biological sequence (u...st Sanger Institute to bundle a FASTA sequence and its quality data, but has recently become the&...
2611 days ago
- SSPACE standard is a stand-alone program for scaffol...sembled contigs using NGS paired-read data. It is unique in offering the...rmation of paired-end and/or matepair data, SSPACE is able to assess the...command-line tool in Perl. The input data is given by pre-assembled con...
2609 days ago
