Results for "3D Genome"
Bookmarks
gbtools: Interactive Visualization of Metagenome Bins in R
...ins including marker gene completeness, and allows the user to add or subtract bins with each other. Tool at https://github.com/kbseah/genome-bin-tools2652 days ago
DeCoSTAR - Detection of Co-evolution
...which aims at reconstructing ancestral gene or genome organizations, in the form of..., or the possibility to handle badly assembled genomes. DeCoSTAR is able to re...usion and fission events, as well as ancestral genome structures for dozens of whol...2633 days ago
ChromHMM: Chromatin state discovery and characterization
...mark. The resulting model can then be used to systematically annotate a genome in one or more cell types. By...gical characterization of each state. ChromHMM also produces files with genome-wide maps of chromatin state...2628 days ago
Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we present a significant update to one of the tools in this domain called En...2620 days ago
- ...equences, you have no idea which region in the genome each sequences comes from, wh...e reference sequence is in most cases the full genome sequence but sometimes, a lib...amount of reads to the correct position in the genome).
2615 days ago
- ...as recently become the de facto standard for storing the output of high-throughput sequencing instruments such as the Illumina Genome Analyzer.[1]
2614 days ago
- ...he frequency of tetra-nucleotides in bacterial genomes contain useful, albeit weak,...alysis (TNA) utilizes the information of whole genome, it is evident that it cannot... phylogenetic characterization when whole genome or 16S rRNA gene information...
2613 days ago
CLA: Contig-Layout-Authenticator
...ings associated with the construction of draft genomes with Illumina paired-end seq...on paired reads, resulting in better assembled genomes. Moreover, CLA also hints at...d and trained extensively on various bacterial genome datasets for the ordering and...2612 days ago
- ...is tutorial will serve as an example of how to use free and open-source genome assembly and secondary scaffo..., respectively. https://github.com/jennomics/WorkflowPaper/blob/master/Genome%20Assembly%20and%20Annotation...
2612 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...ed for software to generate high quality draft genomes. It is based on a series of...erative approach for closing gaps in assembled genomes using mate pair information....ose gaps left open by the assembler in a draft genome, even when using the same dat...2605 days ago
