Results for "Genome Interpretation"
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Pacbio Long Reads Compatible Software and Tools
The following software packages are known to be compatible with PacBio® data, in addition to PacBio's own SMR...ing RNA analysis Epigenetic base modifications and methylation Barcoding Genome Browser...2662 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visualize metagenomic assemblies by plotting c...subtract bins with each other. Tool at https://github.com/kbseah/genome-bin-too...2651 days ago
DeCoSTAR - Detection of Co-evolution
DeCoSTAR is a software which aims at reconstructing ancestral gene or genome organizations, in the form of sets of neigh...r the possibility to handle badly assembled genomes. DeCoSTAR is able to re...on and fission events, as well as ancestral genome structu...2633 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can in...del can then be used to systematically annotate a genome in one or more cell types. By...of each state. ChromHMM also produces files with genome-wide ma...2628 days ago
Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we present a significant update to one of the tools in this domain called Enrichr. Enric...2620 days ago
- NGS data are just a bunch of sequences, you have no idea which region in the genome each sequences comes from, which gene it...erence sequence is in most cases the full genome sequence but sometimes, a lib...t of reads to the correct position in the genome).
2615 days ago
- FASTQ format is a text-based format for storing both a biological sequence (usually nucleotid...put of high-throughput sequencing instruments such as the Illumina Genome Analyze...
2614 days ago
- A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC...cy of tetra-nucleotides in bacterial genomes contain useful, albeit weak,...A) utilizes the information of whole genome, it is evident that it cannot...ogenetic characterization when whole genome or 16S...
2613 days ago
CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes with Illumina paired-end sequencing, we d...aired reads, resulting in better assembled genomes. Moreover, CLA also hints at...d trained extensively on various bacterial genome dataset...2612 days ago
- This tutorial will serve as an example of how to use free and open-source genome assembly and secondary scaffolding tools to generate high quality...ectively. https://github.com/jennomics/WorkflowPaper/blob/master/Genome%20Assem...
2612 days ago
