Results for "New Genome"
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gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visualize metage...or subtract bins with each other. Tool at https://github.com/kbseah/genome-bin-tools2651 days ago
DeCoSTAR - Detection of Co-evolution
DeCoSTAR is a software which aims at reconstructing ancestral gene or genome organizations, in the form of...possibility to handle badly assembled genomes. DeCoSTAR is able to re...fission events, as well as ancestral genome structures for dozens of whol...2632 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing ch...model can then be used to systematically annotate a genome in one or more cell types. By...on of each state. ChromHMM also produces files with genome-wide maps of chromatin state...2627 days ago
Enrichr: a comprehensive gene set enrichment analysis
...hment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we...ently contains 180 184 annotated gene sets from 102 gene set libraries. New features have been added to Enri...2619 days ago
- NGS data are just a bunch of sequences, you have no idea which region in the genome each sequences comes from, wh...ce sequence is in most cases the full genome sequence but sometimes, a lib...reads to the correct position in the genome)....
2614 days ago
- FASTQ format is a text-based format for storing both a biological se...output of high-throughput sequencing instruments such as the Illumina Genome Analyzer.[1]
2613 days ago
- A tetra-nucleotide is a fragment of DNA s...ncy of tetra-nucleotides in bacterial genomes contain useful, albeit weak,...NA) utilizes the information of whole genome, it is evident that it cannot...logenetic characterization when whole genome or 16S rRNA gene information...
2612 days ago
CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes with Illumina paired-end seq...reads, resulting in better assembled genomes. Moreover, CLA also hints at...ined extensively on various bacterial genome datasets for the ordering and...2611 days ago
- This tutorial will serve as an example of how to use free and open-source genome assembly and secondary scaffo...ps://github.com/jennomics/WorkflowPaper/blob/master/Genome%20Assembly%20and%20Annotation...
2611 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of...pproach for closing gaps in assembled genomes using mate pair information....left open by the assembler in a draft genome, even when using the same dat...2604 days ago
