Results for "Whole genome"
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gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visualize metagen...r subtract bins with each other. Tool at https://github.com/kbseah/genome-bin-tools2648 days ago
DeCoSTAR - Detection of Co-evolution
...aims at reconstructing ancestral gene or genome organizations, in the form o...he possibility to handle badly assembled genomes. DeCoSTAR is able to re...and fission events, as well as ancestral genome structures for dozens of whole genomes from all kingdoms of l...2630 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chro...model can then be used to systematically annotate a genome in one or more cell types. By...on of each state. ChromHMM also produces files with genome-wide maps of chromatin state...2625 days ago
Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we prese...2617 days ago
- NGS data are just a bunch of sequences, you have no idea which region in the genome each sequences comes from, wh...ce sequence is in most cases the full genome sequence but sometimes, a lib...reads to the correct position in the genome)....
2612 days ago
- FASTQ format is a text-based format for storing both a biological seq...utput of high-throughput sequencing instruments such as the Illumina Genome Analyzer.[1]
2611 days ago
- ...frequency of tetra-nucleotides in bacterial genomes contain useful, albeit weak...e analysis (TNA) utilizes the information of whole genome, it is evident that it cannot...for phylogenetic characterization when whole genome or 16S rRNA gene information...
2610 days ago
CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes with Illumina paired-end seq...reads, resulting in better assembled genomes. Moreover, CLA also hints at...ined extensively on various bacterial genome datasets for the ordering and...2609 days ago
- This tutorial will serve as an example of how to use free and open-source genome assembly and secondary scaffo...ps://github.com/jennomics/WorkflowPaper/blob/master/Genome%20Assembly%20and%20Annotation...
2609 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of...pproach for closing gaps in assembled genomes using mate pair information....left open by the assembler in a draft genome, even when using the same dat...2602 days ago
