Pacbio Long Reads Compatible Software and Tools
The following software packages are known to be compatible with PacBio® data, in...lling RNA analysis Epigenetic base modifications and methylation Barcoding Genome Browsers Run QC Frameworks...2668 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visualize metagen...r subtract bins with each other. Tool at https://github.com/kbseah/genome-bin-tools2657 days ago
DeCoSTAR - Detection of Co-evolution
DeCoSTAR is a software which aims at reconstructing ancestral gene or genome organizations, in the form of...possibility to handle badly assembled genomes. DeCoSTAR is able to re...fission events, as well as ancestral genome structures for dozens of whol...2639 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chro...model can then be used to systematically annotate a genome in one or more cell types. By...on of each state. ChromHMM also produces files with genome-wide maps of chromatin state...2634 days ago
Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we prese...2626 days ago
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CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes with Illumina paired-end seq...reads, resulting in better assembled genomes. Moreover, CLA also hints at...ined extensively on various bacterial genome datasets for the ordering and...2618 days ago
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