Results for "Genome Project"
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Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we present a significant update to one of the tools in this domain called Enrichr. En...2616 days ago
- NGS data are just a bunch of sequences, you have no idea which region in the genome each sequences comes from, which gene it re...eference sequence is in most cases the full genome sequence but sometimes, a lib...unt of reads to the correct position in the genome)...
2611 days ago
- FASTQ format is a text-based format for storing both a biological sequence (usually nucleotide...utput of high-throughput sequencing instruments such as the Illumina Genome...
2610 days ago
- A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC o...ncy of tetra-nucleotides in bacterial genomes contain useful, albeit weak,...NA) utilizes the information of whole genome, it is evident that it cannot...logenetic characterization when whole genome...
2609 days ago
CLA: Contig-Layout-Authenticator
...ed with the construction of draft genomes with Illumina paired-end seq...ds, resulting in better assembled genomes. Moreover, CLA also hints at...extensively on various bacterial genome datasets for the ordering and...ript https://sourceforge.net/projects/c-l-authenticator/files/2608 days ago
- This tutorial will serve as an example of how to use free and open-source genome assembly and secondary scaffolding tools to generate high quality a...spectively. https://github.com/jennomics/WorkflowPaper/blob/master/Genome%...
2608 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs that w...ative approach for closing gaps in assembled genomes using mate pair information....e gaps left open by the assembler in a draft genome,...2601 days ago
CABOG: Celera Assembler with Best Overlap Graph
...has been a critical component of many genome sequencing projects. CABOG operates on small genomes such as bacterial as well as...publication of the first draft human genome sequence. The software was re...at a time. These programs reconstruct genomes that are billions of letters...2598 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids). Genome annotation is a multi-level proces...developed an automatic prokaryotic genome annotation pipeline that comb...ent. https://www.ncbi.nlm.nih.gov/genome/...2597 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...experiments to produce a map of an early mammalian genome that accounts for 96.8% of the available human genome sequence data. The precision...le future. Our methods were developed as part of a project to reconstruct the genome sequence of the last ancestor...2595 days ago
