A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs that w...ative approach for closing gaps in assembled genomes using mate pair information....e gaps left open by the assembler in a draft genome,...2602 days ago
CABOG: Celera Assembler with Best Overlap Graph
...a critical component of many genome sequencing projects. CABOG operates on small genomes such as bacterial as well as...at they read out very few DNA letters at a time. These programs reconstruct genomes that are billions of letters long from the hundreds of let...2599 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids). Genome annotation is a multi-level proces...developed an automatic prokaryotic genome annotation pipeline that comb...ent. https://www.ncbi.nlm.nih.gov/genome/...2598 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation...ts to produce a map of an early mammalian genome that accounts for 96.8% of the available human genome sequence data. The precision...d as part of a project to reconstruct the genome...2596 days ago
ANGES: reconstructing ANcestral GEnomeS maps
This page contains the software ANGES 1.01, that aims at reconstucting ancestral genome maps from homologous markers in extant related genomes. Download Program, version 1.01 (July 10, 2012, documentation updated...2596 days ago
2596 days ago
Pollux: platform independent error correction of single and mixed genomes
Pollux: General-purpose error corrector that corrects errors introduced by Illumina, Ion Torrent, and Roche 454 sequencing technologies and can be applied to single- or mixed-genome...2595 days ago
2594 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation...ers using Illumina paired reads of three bacterial genomes. Our algorithm constructs a...roved when additional data, in the form of related genome...2591 days ago
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
SIMBA, SImple Manager for Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes...2591 days ago