Results for "genome structure"
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NGS data are just a bunch of sequences, you have no idea which region in the genome each sequences comes from, which gene it r...ference sequence is in most cases the full genome sequence but sometimes, a lib...nt of reads to the correct position in the genome).2617 days ago
- FASTQ format is a text-based format for storing both a biological sequence (usually nucleotide...tput of high-throughput sequencing instruments such as the Illumina Genome An...
2616 days ago
- A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC...cy of tetra-nucleotides in bacterial genomes contain useful, albeit weak,...A) utilizes the information of whole genome, it is evident that it cannot...ogenetic characterization when whole genome or...
2615 days ago
CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes with Illumina paired-end sequencing, we de...paired reads, resulting in better assembled genomes. Moreover, CLA also hints at...nd trained extensively on various bacterial genome da...2614 days ago
- This tutorial will serve as an example of how to use free and open-source genome assembly and secondary scaffolding tools to generate high quality...pectively. https://github.com/jennomics/WorkflowPaper/blob/master/Genome%20...
2614 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs that w...ative approach for closing gaps in assembled genomes using mate pair information....e gaps left open by the assembler in a draft genome, e...2607 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific soft...n a critical component of many genome sequencing projects. CABOG operates on small genomes such as bacterial as well as...ation of the first draft human genome sequence. The software was re...me. These programs reconstruct genomes t...2604 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids). Genome annotation is a multi-level proces...developed an automatic prokaryotic genome annotation pipeline that comb...ent. https://www.ncbi.nlm.nih.gov/genome/an...2603 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation...ts to produce a map of an early mammalian genome that accounts for 96.8% of the available human genome sequence data. The precision...d as part of a project to reconstruct the genome se...2601 days ago
ANGES: reconstructing ANcestral GEnomeS maps
This page contains the software ANGES 1.01, that aims at reconstucting ancestral genome maps from homologous markers in extant related genomes. Download Program, version 1.01 (July 10, 2012, documentation updated...2601 days ago
