A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of...pproach for closing gaps in assembled genomes using mate pair information....left open by the assembler in a draft genome, even when using the same dat...2611 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Ov...n a critical component of many genome sequencing projects. CABOG operates on small genomes such as bacterial as well as...ation of the first draft human genome sequence. The software was re...me. These programs reconstruct genomes that are billions of letters...2608 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designe...nnotate bacterial and archaeal genomes (chromosomes and plasmids). Genome annotation is a multi-level p...loped an automatic prokaryotic genome annotation pipeline that comb...https://www.ncbi.nlm.nih.gov/genome/annotation_prok/...2607 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the an...nts to produce a map of an early mammalian genome that accounts for 96.8% of the available human genome sequence data. The precision...ed as part of a project to reconstruct the genome sequence of the last ancestor...2605 days ago
ANGES: reconstructing ANcestral GEnomeS maps
This page contains the software ANGES 1.01, that aims at reconstucting ancestral genome maps from homologous markers in extant related genomes. Download Program, versi...2605 days ago
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Pollux: platform independent error correction of single and mixed genomes
Pollux: General-purpose error corrector that corrects errors introduced by Illumina,..., and Roche 454 sequencing technologies and can be applied to single- or mixed-genome data. In addition to correcti...2604 days ago
2602 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for...ders using Illumina paired reads of three bacterial genomes. Our algorithm constructs a...proved when additional data, in the form of related genome sequences, are used.2600 days ago
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
SIMBA, SImple Manager for Bacterial Assemblies, is a Web...terface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes sequenced with NextGeneratio...2600 days ago