Results for "Genome Biology"
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Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we present a significant update to one of the tools in this domain called Enrichr. En...2625 days ago
- NGS data are just a bunch of sequences, you have no idea which region in the genome each sequences comes from, which gene it re...eference sequence is in most cases the full genome sequence but sometimes, a lib...unt of reads to the correct position in the genome)...
2620 days ago
- FASTQ format is a text-based format for storing both a biological sequence (usually nucleotide...utput of high-throughput sequencing instruments such as the Illumina Genome...
2619 days ago
- A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC o...ncy of tetra-nucleotides in bacterial genomes contain useful, albeit weak,...NA) utilizes the information of whole genome, it is evident that it cannot...logenetic characterization when whole genome...
2618 days ago
CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes with Illumina paired-end sequencing, we de...paired reads, resulting in better assembled genomes. Moreover, CLA also hints at...nd trained extensively on various bacterial genome...2617 days ago
- This tutorial will serve as an example of how to use free and open-source genome assembly and secondary scaffolding tools to generate high quality a...spectively. https://github.com/jennomics/WorkflowPaper/blob/master/Genome%...
2617 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs that w...ative approach for closing gaps in assembled genomes using mate pair information....e gaps left open by the assembler in a draft genome,...2610 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific soft...n a critical component of many genome sequencing projects. CABOG operates on small genomes such as bacterial as well as...ation of the first draft human genome sequence. The software was re...me. These programs reconstruct genomes...2607 days ago
ERGO 2.0 Bioinformatics suites
ERGO 2.0 provides a systems biology informatics toolkit centered on comparative genomics to capture, query, and visualize sequenced genomes. Using Igenbio's prop...2606 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids). Genome annotation is a multi-level proces...developed an automatic prokaryotic genome annotation pipeline that comb...ent. https://www.ncbi.nlm.nih.gov/genome/...2606 days ago
