Results for "R"
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A free extensible and customizable gene annotation portal, a complete resource for learning about gene and protein function. http://biogps.org/#goto=welcome2931 days ago
- ClueGO is a Cytoscape plug-in that visualizes the non-redundant biological terms for large clusters of genes in a functionally grouped network and it can be used in combination with GOlorize.
2921 days ago
- Database to Database Conversions db2db allows for conversions of identifiers from one database to other datab...b select the input type of your data, changing the input type...more output types and add your identifiers in the ID list bo...widely depending on the number of outputs and the options se...
2921 days ago
- This histone database can be used to explore the diversity of histone proteins and their sequence variants in many organisms. The resource was establ...derstand how sequence variation may affect functional and structural features of nucleosome...
2920 days ago
- methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. T...is designed to deal with sequencing data from RRBS and its variants, but...addition, methylKit can deal with base-pair resolution data for 5hmC obta...
2920 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visu...h Goal: To create blobplots or Taxon-Annotated-GC-Coverage p...using taxon-annotated GC-coverage plots. Sujai Kumar, M...an be visualised, such as Figure 2a from the paper showing TA...
2910 days ago
- ...bsp;Assembly Evaluation Metrics and Reporting (GAEMR) package is an assembly analysis framework composed a number of integra...gram to generate a complete analysis report, or executed individuall...sis pipeline, hence enabling the generation of standard reports. GA...
2909 days ago
- Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often unintentional...ultaneous display of GC content, coverage, and taxonomic annotation...likely to be of use on its own as it requires contig data to be supp...
2909 days ago
- LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific...encing machines. Publication: L. Salmela, R. Walve, E. Rivals, and E. Ukk...fcorrection of errors in long reads using de Bruijn graphs. Accepted to RECOM...
2193 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/configuration and g...Stephen Turner, based on the Lander-Waterman formula, inspired by a sim...2193 days ago
