FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous...2185 days ago
REVIGO: Reduced Visualize gene ontology
REViGO can take long lists of Gene Ontology terms and summarize them by removing redundant GO terms. The remaining terms can be visualized in semantic similarity-bas...2168 days ago
NanoPack: visualizing and processing long-read sequencing data
...r interface, a web service at http://nanoplot.bioinf.be and command line tools. https://academic.oup.com/bioinformatics/article/34/15/2666/49349392157 days ago
2153 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
...ission probability distribution for each long read and uses this to correct errors in these reads. Using datasets from two DNA-seq BAC clones (CH17-157L1 and CH17-227A2), and human...2148 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution Mulan (http://mulan.dcode.org/), a novel method and a network server...2144 days ago
LoRMA: A tool for correcting sequencing errors in long reads
...od is the most accurate one relying on long reads only for read sets with high coverage. Furthermore, when the coverage of the read set is at least 75×, the throughput of the...2130 days ago
Ensembl Variation - Calculated variant consequences
For each variant that is mapped to the reference genome, we identify all overlapping Ensembl transcripts. We then use a rule-based approach to predict the effects th...2127 days ago
S-plot2: creates an interactive, two-dimensional heatmap of sequences
...investigation of quickly evolving coding regions, novel coding regions, and laterally transferred elements. http://www.putonti-lab.com/uploads/4/5/3/0/45307835/s-plot2_tutorial.pdf h...2109 days ago
Heatmapper: web-enabled heat mapping for all
...nscriptomic, proteomic and metabolomic experiments; 2) pairwise distance maps; 3) correlation maps; 4) image overlay heat maps; 5) latitude and longitude...2106 days ago