Results for "CA"
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...ence genome of the species. However, in most typical protocols, this information...o assembly software to experimental reads and so-called pseudoreads and uses the...escribe our approach and test its implementation called RECORD. We evaluate RECOR...2772 days ago
- ...itivity, genome-wide synteny; Papaya, an all-purpose alignment tool for less diverged sequences; and SLAP, a context-sensitive local aligner for diverged sequenc...
2769 days ago
- HGA tool version 1.0 This tool helps to apply the Hierarchical Genome Assembly (HGA) method. The tool will...contigs, using a given kmer size. https://github.com/aalokaily/Hierarchical-Genome-Assembly-HGA...
2768 days ago
- EXCAVATOR2 is a collection of bash, R an...cing (WES) data to identify CNVs. EXCAVATOR2 enhances the identification of all genomic CNVs, both...gets and Off- targets reads. Specifically, it improves the precision...r interest that all WES experiments can be re-analysed using our met...
2767 days ago
- SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at https://github.com/atifrahman/SWALO.
2767 days ago
- ...given single-end reads, aligns reads to reference sequence(s). All of these analyses will be shown with Krona program, which allows to show hierarchical data with pie charts.
2766 days ago
- Latest announcement on DBT India. Calls Events Projects Jobs
2762 days ago
- ...short-read assembler based on a de Bruijn graph, capable of assembling a human ge...nbsp;(Legacy codebase) For the impatient A typical Minia command line looks lik...ation, refer to the manual. KmerGenie can be used to determine the bes...
2759 days ago
- ...e bamtools library (https://github.com/pezmaster31/bamtools) -zlib (http://www.zlib.net/) -(optional but suggested) the jemalloc memory allocator (http://www.canonware.com/jemalloc/download....
2759 days ago
- ...ill take either a single file or a pair of files as input. If no input file is specified, fqtools will attempt to read data from stdin. In this case, it is advisabe to specify...
2759 days ago
