Results for "NGS data analysis"
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High throughput sequencing (HTS) technologies are being applied to a wide range of important topics in biology. However, the analyses of non-model organisms, for which l...2639 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with high error rat..., etc. Why is LoRDEC different? It is efficient and can process large read data set...2634 days ago
- UpSetR generates static UpSet plots. The UpSet technique visualize...introduces aggregates based on groupings and queries. The matrix layout...ffective representation of associated data, such as the number of elemen...ent attributes. To begin, input your data usi...
2630 days ago
Metagenomics assembly workshop !!
Welcome to the one-day metagenomics assembly workshop. This tutorial will guide you through the typical steps of metagenome assembly and binning. The Tutorial Data Set...2626 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modificati...ments for large-scale functional and annotation datasets...2625 days ago
Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide exper...ly contains a large collection of diverse gene set libraries available for analysis and download. In total, Enric...2617 days ago
- NGS data are just a bunch of sequences, you have no idea which region in the genome each sequences...ce sequence is called mapping. The most used mappers of DNA-seq data are BWA and Bowtie for DNA-Seq data and...
2612 days ago
- FASTQ format is a text-based format for storing both a biological sequence (usually nucleotid...ust Sanger Institute to bundle a FASTA sequence and its quality data, bu...
2611 days ago
- A tetra-nucleotide is a fragment of DNA sequence with 4...phylogenetic signals. Even though tetra-nucleotide analysis (TNA) utilizes the inform...used as a search engine against a large genome database.
2610 days ago
- SSPACE standard is a stand-alone program for scaffolding pre-assembled contigs using NGS paired-read data. It is unique in offering the...of paired-end and/or matepair data, SSPACE is able to assess the...-line tool in Perl. The input data is given by pre-assembled contig sequences (FASTA) and NGS pair...
2609 days ago
