MGRA: Breakpoint graphs and ancestral genome reconstructions
MGRA (Multiple Genome Rearrangements and Ancestors)...for reconstruction of ancestor genomes and evolutionary history of extant genomes. It takes as an input a set...s such sequences for ancestral genomes at the internal nodes of the...n and deletions in addition to genome rearrangements and allows the...2528 days ago
2527 days ago
Web Apollo: a web-based genomic annotation editing platform
Web Apollo is the first instantaneous, collaborative geno...there are more and more researchers sequencing new genomes. These researchers require t...be the functional features of their newly sequenced genomes. With Web Apollo researchers...2525 days ago
2522 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
Sequence - Evolution - Function is an introduction to the computational approac...the potential and limitations of computational and experimental approaches to genome analysis....2516 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
...a new algorithm, meraculous, for whole genome assembly of deep paired-end s...s derived from the 15.4 megabase genome of the haploid yeast Pic...a stipitis. More than 95% of the genome is recovered, with no errors;...prospects for assembling larger genomes are discussed....2423 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (most often 100 bp to...n error in some read at every base in the genome. These errors make handling t...by correcting actual Illumina reads from genomes for which a reference assemb...2422 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
We developed a prokaryotic genome annotation pipeline, DFAST, that also supports genome submission to public sequence databas...an annotate a typical-sized bacterial genome within 10 minutes, with rich...ne assignment between given reference genomes. In addition, the modular fr...2416 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transv...gous and paralogous copies in all the other sequenced metazoan genomes. Moreover, Genomicus stores...2411 days ago
2410 days ago