Results for "Whole genome re-sequencing"
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This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences o...ntial coverage binning of multiple metagenomes Mads Albertsen, Philip Huge...s://github.com/MadsAlbertsen/multi-metagenome2667 days ago
- Samtools is a suite of programs for interacting with high-throughput sequencing data. It consists of three separate repositories: SamtoolsReading/writing/editing/indexing...
2666 days ago
Pacbio Long Reads Compatible Software and Tools
The following software packages are known to be compatible with PacBio® data, in addition to PacBio's own SMR...ing RNA analysis Epigenetic base modifications and methylation Barcoding Genome Browse...2666 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visualize metagenomic assemblies by plotting c...subtract bins with each other. Tool at https://github.com/kbseah/genome-bin-to...2655 days ago
- SNPGenie is a Perl script for estimating evolutionary parameters, mainly from pooled next-generation sequencing (NGS) single-nucleotide polymorphism (SNP) variant data. SN...
2651 days ago
- This website and accompaning documents are intended as a tool to help researchers dealing with non-model organisms acquire and process transcriptomic high-throughput seque...
2648 days ago
- High throughput sequencing (HTS) technologies are being applied to a wide range of important topics in biology. However, the analyses of non-model organisms, for which lit...
2645 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for PacBio reads. It uses a...2640 days ago
DeCoSTAR - Detection of Co-evolution
DeCoSTAR is a software which aims at reconstructing ancestral gene or genome organizations, in the form of sets of...possibility to handle badly assembled genomes. DeCoSTAR is able to re...fission events, as well as ancestral genome structures for dozens of whole genomes...2636 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can in...del can then be used to systematically annotate a genome in one or more cell types. By...of each state. ChromHMM also produces files with genome-wide m...2631 days ago
