2728 days ago
BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective an...and chromosomal abnormalities. Unfortunately, the mapping and alignment of mate pair re...uctural variant breakpoints within reads increases mapping and alignment complexity. We...2727 days ago
TMAP - torrent mapping alignment program General Notes
TMAP - torrent mapping alignment program General Notes TMAP is a fast and accurate alignment software for short and long nucleotide sequences produced by next-generation seque...2618 days ago
2663 days ago
2663 days ago
YASRA: Reference based assembler
YASRA (Yet Another Short Read Assembler) performs comparative assembly of short read...erence genome, which can differ substantially from the genome being sequenced. Mapping reads to reference genomes ma...2650 days ago
Metagenomics assembly workshop !!
Welcome to the one-day metagenomics assembly workshop. This tutorial will guid...BA-UD Assembly Ray Assembly Gene Prediction Assembly Evaluation Read Mapping MetaQUAST Binning Ma...2602 days ago
2588 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is..., that enables errors in the consensus sequence to be corrected by iteratively mapping reads to the current assembly...2578 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of tho...he available human genome sequence data. The precision is further increased by mapping inversions as small as 31 bp....2572 days ago