2663 days ago
2663 days ago
YASRA: Reference based assembler
...Assembler) performs comparative assembly of short reads using a reference genome, which can differ substantially from the genome being sequenced. Mapping reads to reference genomes ma...2650 days ago
Metagenomics assembly workshop !!
...Quality Control Assembly Velvet Assembly MEGAHIT Assembly IDBA-UD Assembly Ray Assembly Gene Prediction Assembly Evaluation Read Mapping MetaQUAST Binning Ma...2602 days ago
2588 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...using the same data sets as used by the original assembler. iCORN, that enables errors in the consensus sequence to be corrected by iteratively mapping reads to the current assembly...2578 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...uce a map of an early mammalian genome that accounts for 96.8% of the available human genome sequence data. The precision is further increased by mapping inversions as small as 31 bp....2572 days ago
2570 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...ll/ncomms11307.htmlFeatures Mapping position agnostic to alignmen...; E-value. Meaningful mapping quality. Va...ovo assembly. Transcriptome mapping through internal construction...2552 days ago
QuorUM: An Error Corrector for Illumina Reads
...ads. However, there is enough information in the reads to correct most of the sequencing errors, thus making subsequent use of the data (e.g. for mapping or assembly) easier. Here we...2398 days ago