Results for "non coding RNA"
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KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows to identify SNPs, indels and alternative splicing events. It can d...2848 days ago
GeneValidator - Identify problems with predicted genes
GeneValidator helps in identifing problems with gene predictions and provide useful information extracted from analy...m A, Bustos C & Wurm Y. 2016. GeneValidator: identify problems with protein-cod...2838 days ago
Method in Comparative genomics !!
We present methods for the automatic determination of genome correspondence. The algorithms enabled the automatic id...of rapid genomic change. We present methods for the identification of protein-cod...2762 days ago
- Gene finding in eukaryotic genomes is notoriously difficult...eMark-ET is a gene prediction tool that incorporates RNA-Seq data into unsupervised tr...quires supervised training and uses information from RNA-Seq reads in the prediction s...
1980 days ago
- R-chie allows you to make arc diagrams of RNA secondary structures, allowing for easy comp...ce alignments and co-variation information.R4RNA is the R package powerin...tomized figures and scripting. http://www.e-rna.org/r-chie/plot.cgi?eg=single
2832 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
A recombination map has been added for all multi-locus traits. The ma...age can thus be finely explored. A new trait coding for (Bateson-)Dobzhansky-Mull...etermined by different types of loci under selectinon, such as QTLs cod...2801 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for the analysis of miRNA (or more generall short RNA) expression using short-read...ifferent mappers, create differential gene (miRNA) expression profiles and clus...
2798 days ago
- Motif based sequence analysis suits The MEME Suite allows the biologist to disc...her motif-based analyses. The MEME Suite supports motif-based analysis of DNA, RNA and protein sequences. It pro...
2719 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
...ss count matrix Perform RNA velocity and single-nuclei RNA-seq analsis Quantify data fr...rotocols. Process feature barcoding data such as CITE-seq, REA...n QC reports from single-cell RNA-seq data The kallisto...pre-processing of single-cell RNA-seq, Nature Biotechnology (20...1155 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence a...proach to aligning homologous protein, RNA or DNA sequences. Much as distan...by Ariel Schwartz in "Posterior Decoding Methods for Optimization a...or small-scale analyses of proteins or RNAs to large-scale problems such...2674 days ago
