Pacbio Long Reads Compatible Software and Tools
...PacBio's own SMRT® Analysis suite. All packages are believed to be open source or freely available for non-commercial use. See the individual project sites for up-to-date license...2635 days ago
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CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...our results are reasonably accurate and that they will become highly accurate in the foreseeable future. Our methods were developed as part of a project to reconstruct the genome seq...2572 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...ors, or with low or high community diversity. Grinder may also be used to help decide between alternative sequencing methods for a sequence-based project, e.g. should the library be p...2566 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...iven genomic reference and a GTF file. ...and much more.GraphMap is also used as an overlapper in a new de novo genome assembly project called Ra (https://github.com...2552 days ago
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GeneProf: analysis of high-throughput sequencing experiment
...Research, University of Edinburgh and has benefited from funding by the Medical Research Council and the EU Framework 7 Project "EuroSyStem"....2523 days ago
Computational Genomics: Applied Comparative Genomics
...ignments, a midterm exam, class presentations, and a significant class project. There are no formal course p...IX scripting and/or programming to complete the assignments and course project.2377 days ago