LoRDEC: a hybrid error correction program for long, PacBio reads
...ed for PacBio reads. It uses a hybrid strategy, meaning that it uses two sets of reads: the reference read...is LoRDEC different? It is efficient and can process large read data sets, included from eukaryotic or...2609 days ago
DeCoSTAR - Detection of Co-evolution
DeCoSTAR is a software which aims at reconstructing ancestral gene or genome organizations, in the form of sets of neighborhood relations -adjacencies- between pairs of ancestral gen...2605 days ago
Enrichr: a comprehensive gene set enrichment analysis
...analysis is a popular method for analyzing gene sets generated by genome-wide expe...richr currently contains 180 184 annotated gene sets from 102 gene set libraries....o Enrichr including the ability to submit fuzzy sets, upload BED files, improved a...2592 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...assembled genomes using mate pair information. It is able to close gaps left open by the assembler in a draft genome, even when using the same data sets as used by the original assem...2577 days ago
CABOG: Celera Assembler with Best Overlap Graph
...ncing machines and second-generation pyrosequencing machines (Marine microbes, 2006). Today, CABOG is one of the leading assembly programs for data sets that include paired end data...2574 days ago
Pollux: platform independent error correction of single and mixed genomes
...nd correct insertion, deletion, and homopolymer errors while remaining sensitive to low coverage areas of sequencing projects. Using published data sets, we correct 94% of Illumina M...2570 days ago
BEDOPS v2.4.26: high-performance genomic feature operations
...suite of tools to address common questions raised in genomic studies — mostly with regard to overlap and proximity relationships between data sets. It aims to be scalable and f...2546 days ago
orthodotter: Synteny plots (oxford grid)
...enes, default is stdin species chr-name start end species chr-name start end -toPlot <arg> : give the x and y sets and the color separated by do...2488 days ago
Unicycler: Hybrid assembly pipeline for bacterial genomes
...pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore...2395 days ago
2385 days ago