Metagenomics assembly workshop !!
...QC Quality Control Assembly Velvet Assembly MEGAHIT Assembly IDBA-UD Assembly Ray Assembly Gene Prediction Assembly Evaluation Read Mapping MetaQUAST Binning...2637 days ago
ChromHMM: Chromatin state discovery and characterization
...unctional and annotation datasets ChromHMM facilitates the biological characterization of each state. ChromHMM also produces files with genome-wide maps of chromatin state annotatio...2636 days ago
Enrichr: a comprehensive gene set enrichment analysis
...ene sets from 102 gene set libraries. New features have been added to Enrichr including the ability to submit fuzzy sets, upload BED files, improved application programming interfac...2628 days ago
2623 days ago
2620 days ago
Barrnap: Bacterial ribosomal RNA predictor
Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S...2613 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...assembly against a closely related reference. IMAGE, an iterative approach for closing gaps in assembled genomes using m...es errors in the consensus sequence to be corrected by iteratively mapping reads to the current asse...2613 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific software for DNA research. CABOG has been...ophila melanogaster, 2000). It was the first to assemble both parental haplotypes of one human genome (J...2610 days ago
ERGO 2.0 Bioinformatics suites
ERGO 2.0 provides a systems biology informatics toolkit centered on comparative genomics to capture, query, and visualize sequenced genomes. Using Igenbio's proprietary algori...2609 days ago
NCBI Prokaryotic Genome Annotation Pipeline
...irst version of NCBI Prokaryotic Genome Automatic Annotation Pipeline (PGAAP; see Pubmed Article) developed in 2005 has been replaced with an upgraded version that is capable of processing a larger da...2609 days ago