2385 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly sensitive to contamination making the detec...for the post-assembly detection of contaminating sequences in the published genome of the kelp Saccharina j...2382 days ago
coursera genome assembly tutorial
Solutions to Coursera Genome Sequencing (Bioinformatics II)2380 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...ding the mapping step, it takes about 3 minutes to assemble a bacterial genome. Under the default setting, m...provements. Miniasm confirms that at least for high-coverage bacterial genomes, it is possible to generate...2378 days ago
Opera: An optimal genome scaffolding program
...been re-engineered with features for the assembly of large and complex genomes.Song Gao, Denis Bertrand, Bu...RA-LG: efficient and exact scaffolding of large, repeat-rich eukaryotic genomes with performance guarantees....2378 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...ION, has become available that we used for sequencing the S. cerevisiae genome. To make use of these data, w...ads presents a much more complete representation of the features of the genome and correctly assembles gene...2376 days ago
Computational Genomics: Applied Comparative Genomics
...g computational and quantitative approaches for comparing and analyzing genomes starting from raw sequencing...be broadly applicable across the tree of life. The topics will include genome assembly & comparative ge...2376 days ago
2376 days ago
Ribbon: Visualizing complex genome alignments and structural variation:
Ribbon can be used for long reads, short reads, paired-end reads, and assembly/genome alignments. Instructions for each data format are available by clicking on "instructions" in each...2376 days ago
Scripts for the analysis of HGT in genome sequence data.
Scripts for the analysis of HGT in genome sequence data2376 days ago