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Comparative genomics educational material and papers bookmarks
Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny blo...ared by pigs and cattle) were detected using the pig and human genomes as a reference, respective...2795 days ago
Method in Comparative genomics !!
...plicated genes in the yeast genome. The remaining ambiguities...ansions in regions of rapid genomic change. We present method...ed this test to revisit the genome of S. cerevisiae, reducing...ory motifs as well as several noteworthy novel motifs. The maj...2795 days ago
Maq: Mapping and Assembly with Quality
...q is a project hosted by SourceForge.net. The project page is available athttp://sourceforge.net/projects/maq/. Maq is previously known as mapass2. Run Maq Now Follow these steps to try M...2783 days ago
- ...akes constructing JavaScript diagrams of complex nodes, links, and groups easy wi...round-trips to servers and without plugins. GoJS normally runs completely in the...rk with any HTML or JavaScript framework or with no framework at all. &nbs...
2783 days ago
- ...ext-generation sequencing technologies are now producing multiple times the...xperiment and the reference genome of the species. However, in...ment. Our approach applies de novo assembly software to experi...ceforge.net/projects/record-genome-assembler/files/
2780 days ago
- ...re tools, developed and used by the Vertebrate Genome Biology Group at the Broad...ctures for efficient data manipulation (mostly genomic sequences, alignments, var...hly parallelized program for high-sensitivity, genome-wide synteny; Papaya,&...
2777 days ago
- HGA tool version 1.0 This tool helps to apply the Hierarchical Genome Assembly (HGA) method. The tool will...gs, using a given kmer size. https://github.com/aalokaily/Hierarchical-Genome-Assembly-HGA
2776 days ago
- ...o identify CNVs. EXCAVATOR2 enhances the identification of all genomic CNVs, both overlapping and non-overlapping targeted exons b...analysed using our method with the beneficial effect to identify novelCNVs in extra-exonic region...
2775 days ago
- SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at https://github.com/atifrahman/SWALO.
2775 days ago
- Bipype is a very useful program, which prepare a lot of types of bioinformatics analyses. There are three input options: amplicons, WGS (whole genome sequences) and metatranscriptom...
2774 days ago
