Results for "OS"
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...corresponding node/species on NCBI web site (displayed in a new window) Possibility to download the corresponding subtree in newick extended format Possibilty to get the whole linea...2639 days ago
DeCoSTAR - Detection of Co-evolution
DeCoSTAR is a software which aims at reconstructing ancest...ees in a context of birth, speciation, duplication, loss, transfer, which are either...computed with the ecceTERA package, to which DeCoSTAR is integrated. DeCoSTAR co...2635 days ago
- ...eference sequence. The reference sequence is in most cases the full genome sequen...the reference sequence is called mapping. The most used mappers of DNA-seq data...urate they are. Bowtie is faster than BWA, but looses some sensitivity (does not...
2617 days ago
- SSPACE standard is a stand-alone program for scaffolding pre-assembled contigs using NGS paired-read data. It is unique in offering the possibility to manually control the scaffoldi...
2614 days ago
CLA: Contig-Layout-Authenticator
...ed on paired reads, resulting in better assembled genomes. Moreover, CLA also hints at probable misassemblies and contaminations, for the users to cross-check before constructing th...2614 days ago
Barrnap: Bacterial ribosomal RNA predictor
Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archae...HMM searching in RNA:DNA style. NHMMER binaries for 64-bit Linux and Mac OS X are included and will be au...2607 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...to contiguate contigs from a de novo assembly against a closely related reference. IMAGE, an iterative approach for closing gaps in assembled genomes...mbly. An improved version, especially correction Pacfic Bioscience assemblies (PacBio) can...2607 days ago
CABOG: Celera Assembler with Best Overlap Graph
...ftware was released to the public domain in 2004. Its open source repository on Source Forge is...s. It was the first to assemble the genome of a multicellular organism (Drosophila melanogaster, 2000). It...2604 days ago
ERGO 2.0 Bioinformatics suites
...toolkit centered on comparative genomics to capture, query, and visualize sequenced genomes. Using Igenbio's proprietary algorithms, and the most comprehensive genomic databa...2603 days ago
NCBI Prokaryotic Genome Annotation Pipeline
...ion Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids). Genome an...control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements....2603 days ago
