Results for "PA"
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...advanced features for user interactivity such as drag-and-drop, copy-and-paste, in-place text editing, to...plates, data binding and models, transactional state and undo management, palettes, overviews, event handl...2780 days ago
- ...additional sequencing cost, generate new, modified reference sequence that is closer to the actual sequenced genome and has a full coverage. In this paper, we describe our approach...
2777 days ago
- ...es, alignments, variation etc.), as well as specialized tool sets for various analyses. It also features three sequence alignment packages: Satsuma, a highly parallelized program for high-se...
2774 days ago
- ...ical Genome Assembly (HGA) method. The tool will apply: 1. Partitioning a given reads dataset into a given number of partitions. 2. Assembling each p...ng a given kmer size. 3. Merging all the assemblies of the partition. 4. Combining all the...
2773 days ago
- ...fectively employed for the identification of CNVs in small as well as large-scale re-sequencing population and cancer studies. Lastly, it’s of particular interest that all WES...
2772 days ago
- Bipype is a very useful program, which prepare a lot of types of bioinformatics analyses. There are three...ic data. If amplicons are input data, then bipype does reconstruction and pairs merging. After that biodiv...
2771 days ago
- ...ort-read assembler based on a de Bruijn graph, capable of assembling a human geno...;(Source code) (Legacy codebase) For the impatient A typical Minia command...x Type ./minia for a quick explanation of the parameters. For more informatio...
2764 days ago
- ...using a compressed representation of DNA sequence reads. More at https://github.com/jts/sga SGA dependencies: -google sparse hash library (http://code.google.com/p/google-sparsehash/) -the bamtools librar...
2764 days ago
- ...e. Most of the individual subcommands will take either a single file or a pair of files as input. If no in...ided. For subcommands that generate FASTQ data, either a single file or a pair of files will be generated....
2764 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) pdflatex (usually part of TeTeX) ggplot2 (from R prom...nome). If using BLAT, add faToTwoBit,gfClient,gfServer to your PATH. If using BLAST, add blasta...2763 days ago
