2410 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly sensitive to contamination making the detec...for the post-assembly detection of contaminating sequences in the published genome of the kelp Saccharina j...2407 days ago
coursera genome assembly tutorial
Solutions to Coursera Genome Sequencing (Bioinformatics II)2405 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...3 minutes to assemble a bacterial genome. Under the default setting,... (only 40X are used, not the whole dataset), miniasm finishes th...ore accurate. In addition, on the whole data set (assembled in ~30 min...least for high-coverage bacterial genomes, it is possible to generate...2403 days ago
Opera: An optimal genome scaffolding program
Opera (Optimal Paired-End Read Assembler) is a sequence a...with features for the assembly of large and complex genomes.Song Gao, Denis Bertrand, Bu...exact scaffolding of large, repeat-rich eukaryotic genomes with performance guarantees....2403 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
Monitoring the progress of DNA molecules through a membra...lable that we used for sequencing the S. cerevisiae genome. To make use of these data, w...more complete representation of the features of the genome and correctly assembles gene...2401 days ago
Computational Genomics: Applied Comparative Genomics
The primary goal of the course is for students to be grou...quantitative approaches for comparing and analyzing genomes starting from raw sequencing...le across the tree of life. The topics will include genome assembly & comparative ge...2401 days ago
2401 days ago
Ribbon: Visualizing complex genome alignments and structural variation:
Ribbon can be used for long reads, short reads, paired-end reads, and assembly/genome alignments. Instructions for...2401 days ago
Scripts for the analysis of HGT in genome sequence data.
Scripts for the analysis of HGT in genome sequence data2400 days ago