Results for "Whole genome re-sequencing"
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DBG2OLC:Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies...in Scientific Reports: Ye, C. et al. DBG2OLC: Efficient Assembly of Large Genomes Using...2631 days ago
Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we present a significant update to one of the tools in this domain called Enrichr. Enric...2623 days ago
- NGS data are just a bunch of sequences, you have no idea which region in the genome each sequences comes from, which gene it r...ference sequence is in most cases the full genome sequence but sometimes, a lib...nt of reads to the correct position in the genome).
2618 days ago
- FASTQ format is a text-based format for storing both a biological sequence (usually nucleotid...put of high-throughput sequencing instruments such as the Illumina Genome Analyz...
2617 days ago
- A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGT...y of tetra-nucleotides in bacterial genomes contain useful, albeit weak...s (TNA) utilizes the information of whole genome, it is evident that it cannot...;phylogenetic characterization when whole genome or 16S...
2616 days ago
CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes with Illumina paired-end sequencing, we d...aired reads, resulting in better assembled genomes. Moreover, CLA also hints at...d trained extensively on various bacterial genome datase...2615 days ago
- This tutorial will serve as an example of how to use free and open-source genome assembly and secondary scaffolding tools to generate high quality...ectively. https://github.com/jennomics/WorkflowPaper/blob/master/Genome%20Asse...
2615 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs that...tive approach for closing gaps in assembled genomes using mate pair information....gaps left open by the assembler in a draft genome, even...2608 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific sof...a critical component of many genome sequencing projects. CABOG operates on small genomes such as bacterial as well as...tion of the first draft human genome sequence. The software was re...e. These programs reconstruct genomes that...2605 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids). Genome annotation is a multi-level proce...eveloped an automatic prokaryotic genome annotation pipeline that comb...nt. https://www.ncbi.nlm.nih.gov/genome/annota...2604 days ago
