2529 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
Sequence - Evolution - Function is an introduction to the computational approaches that play a critical role...the potential and limitations of computational and experimental approaches to genome an...2523 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
We describe a new algorithm, meraculous, for whole genome assembly of deep paired-end short...ads derived from the 15.4 megabase genome of the haploid yeast Pic...hia stipitis. More than 95% of the genome is recovered, with no errors;...nd prospects for assembling larger genomes a...2430 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (most often 100 bp to 150...has an error in some read at every base in the genome. These errors make handling t...uorUM by correcting actual Illumina reads from genomes f...2428 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
We developed a prokaryotic genome annotation pipeline, DFAST, that also supports genome submission to public sequence databases. D...ine can annotate a typical-sized bacterial genome within 10 minutes, with rich...us gene assignment between given reference genomes....2423 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along...ies in all the other sequenced metazoan genomes. Moreover, Genomicus stores...displays the predicted ancestral genome structure in all the ancestral species...2418 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
...ion of chromosomal homologous segments (CHS) within and between genomes is essential for comparative...r both experimentalists and bioinformaticians interested in the structure and evolution of genomes. https://github.com/zh...2418 days ago
2417 days ago
2417 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly sensitive to contamination making the detection of foreign DNA sequ..., for the post-assembly detection of contaminating sequences in the published genome of...2414 days ago