E-MEM: Efficient computation of Maximal Exact Matches
E-MEM is a C++/OpenMP program designed to efficiently compute MEMs between large genomes. See the README file for instructions on how to use E-MEM. E-MEM source code Th...2761 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
...tools able to assemble, de novo, an organism sequenced with short reads, the results are still far from those achievable with long reads. In this paper, we propose a novel method t...2757 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers...r (Kurtz et al., 2004) packages. The pipeline was tested on Debian, Ubu...(CE) problems in the assemblies can be per-formed; contigs are joined b...2757 days ago
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MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
...reads from metagenomic sequencing runs) Description MeGAMerge is a perl based wrapper/tool that can accept any num...installed and in $PATH, or added to $binpath in the tool: Newbler (specifically runAssembly)Minimus2...2757 days ago
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