Results for "CA"
Bookmarks
GAM-NGS: genomic assemblies merger for next generation sequencing
...ions of the two assemblies representing the same genomic locus (called blocks) are identifi...eads' alignments and stored in a weightedgraph. The merging phase is carried out with the help of thi...2750 days ago
- ...nt and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a fe...g the target fragment size as input. In addition, it implements a statistical test for minimizing false-po...
2750 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
...equencing runs) Description MeGAMerge is a perl based wrapper/tool that can accept any number of sequenc...nstalled and in $PATH, or added to $binpath in the tool: Newbler (specifically runAssembly)Minimus2 (part...2750 days ago
- ...and PacBio long reads to improve contiguities of an assembly generated with PacBio long reads alone. This is counterintuitive because illumina short reads are not typically considered to cover genomi...
2750 days ago
- LAST can: Handle big sequence data, e.g: Com...es Align billions of DNA reads to a genome Indicate the reliability o...eins, with frameshifts. Compare PSSMs to sequences Calculate the likelihood of chan...
2750 days ago
- pyScaf orders contigs from genome assem...pecies (reference-based mode) Scaffolding In reference-based mode, pyScaf uses synteny to the genome o...ence. In preliminary tests, pyScaf performed superbly on simula...with contigs than scaffolds, as scaffolds are often affected by m...
2750 days ago
- If genomes were completely random sequences in a statistical sense, 'overlap-consensus-layout' method would have been enough to assemble large genomes from Sanger reads. In contrast...
2749 days ago
- MCscan is a computer program that can simultaneously scan multiple genomes to identify homologous chr...ny correspondences in Plant Genome Duplication Database. It is intended...ore at http://chibba.agtec.uga.edu/duplication/mcscan/
2747 days ago
Finding Patterns in Biological Sequences
...ew of known techniques for discovery of patterns of biological sequences (DNA and proteins). We also provide biological motivation, and methods of b...supplement is available through http://genetics.uwaterloo.ca/∼tvinar/cs798g/motif....2747 days ago
- ...if discovery, the MEME Suite provides tools for scanning sequences for matches to motifs (FIMO, MAST and GLAM2Scan), scanning for clusters of m...e software. To see what has changed recently you can peruse the release note...
2746 days ago
